top of page

CES-Funded Publications

Abrams MJ, Tan FH, Li Y, Basinger T, Heithe ML, Sarma A, Lee IT, Condiotte ZJ, Raffiee M, Dabiri JO, Gold DA, Goentoro L. A conserved strategy for inducing appendage regeneration in moon jellyfish, Drosophila, and mice. Elife. 2021 Dec 7;10:e65092. doi: 10.7554/eLife.65092. Erratum in: Elife. 2023 Jun 22;12: PMID: 34874003; PMCID: PMC8782573.

Cao M, Schwartz HT, Tan CH, Sternberg PW. The entomopathogenic nematode Steinernema hermaphroditum is a self-fertilizing hermaphrodite and a genetically tractable system for the study of parasitic and mutualistic symbiosis. Genetics. 2022 Jan 4;220(1):iyab170. doi: 10.1093/genetics/iyab170. PMID: 34791196; PMCID: PMC8733455.

Chari T, Weissbourd B, Gehring J, Ferraioli A, Leclère L, Herl M, Gao F, Chevalier S, Copley RR, Houliston E, Anderson DJ. Whole-animal multiplexed single-cell RNA-seq reveals transcriptional shifts across Clytia medusa cell types. Science Advances. 2021 Nov 26;7(48):eabh1683.

Gakkhar, S., Marcolli, M. Syntactic Structures and the General Markov Models. Math.Comput.Sci. 18, 4 (2024).

Jain S, Xiao X, Bogdan P, Bruck J. Generator based approach to analyze mutations in genomic datasets. Scientific Reports. 2021 Oct 26;11(1):21084.

Kitchen, S.A. , Naragon, T. H.,Brückner, A, Ladinsky, M. S., Quinodoz, S. A., Badroos, J.M., Viliunas, J.W., Kishi, Y., Wagner, J.M., Miller, D.R., Yousefelahiyeh, M., Antoshechkin, I.A., Eldredge, K.T., Pirro, S., Guttman, M., Davis, S.R., Aardema, M.L., Parker, J. The genomic and cellular basis of biosynthetic innovation in rove beetlesCell, 2024, Jun 17.

Li H, Kipp MA, Kim SL, Kast ER, Eberle JJ, Tissot FL. Exploring uranium isotopes in shark teeth as a paleo-redox proxy. Geochimica et Cosmochimica Acta. 2023 Dec 2.

Raban R, Marshall JM, Hay BA, Akbari OS. Manipulating the destiny of wild populations using CRISPR. Annual Review of Genetics. 2023 Sep 18;57.

Schwartz HT, Tan CH, Peraza J, Raymundo KLT, Sternberg, P. Molecular identification of a peroxidase gene controlling body size in the entomopathogenic nematode Steinernema hermaphroditum. bioRxiv 2023.11.07.566113;

Smith BP, Edie SM, Fischer WW. Tracing energy inputs into the seafloor using carbonate sediments. 20

Smith BP, Ingalls M, Trower EJ, Lingappa UF, Present TM, Magyar JS, Fischer WW. Physical controls on carbonate intraclasts: Modern flat pebbles from Great Salt Lake, Utah. Journal of Geophysical Research: Earth Surface. 2020 Nov;125(11):e2020JF005733.

Smith BP, Kerans C, Fischer WW. A Redox‐Based Model for Carbonate Platform Drowning and Ocean Anoxic Events. Geophysical Research Letters. 2021 Jul 16;48(13):e2021GL093048.

Weissbourd B, Momose T, Nair A, Kennedy A, Hunt B, Anderson DJ. A genetically tractable jellyfish model for systems and evolutionary neuroscience. Cell. 2021 Nov 24;184(24):5854-5868.e20. doi: 10.1016/j.cell.2021.10.021. PMID: 34822783; PMCID: PMC8629132.

Weissbourd B, Momose T, Nair A, Kennedy A, Hunt B, Anderson DJ. Functional modules within a distributed neural network control feeding in a model medusa. bioRxiv. 2021 Feb 23:2021-02.

Wu F, Speth DR, Philosof A, Crémière A, Narayanan A, Barco RA, Connon SA, Amend JP, Antoshechkin IA, Orphan VJ. Unique mobile elements and scalable gene flow at the prokaryote–eukaryote boundary revealed by circularized Asgard archaea genomes. Nature Microbiology. 2022 Feb;7(2):200-12.

CES-Funded Preprints

Marcolli M, Berwick RC, Chomsky N. Syntax-semantics interface: an algebraic model. arXiv preprint arXiv:2311.06189. 2023 Nov 10.

Marcolli M, Berwick RC, Chomsky N. Old and New Minimalism: a Hopf algebra comparison. arXiv preprint arXiv:2306.10270. 2023 Jun 17.

Marcolli M, Chomsky N, Berwick R. Mathematical Structure of Syntactic Merge. arXiv preprint arXiv:2305.18278. 2023 May 29.

Oberhofer G, Johnson ML, Ivy T, Hay BA. Cleave and Rescue gamete killers create conditions for gene drive in plants. bioRxiv. 2023 Oct 14.

Torok Z, Luebbert L, Feldman J, Duffy A, Nevue AA, Wongso S, Mello CV, Fairhall A, Pachter L, Gonzalez WG, Lois C. Recovery of a learned behavior despite partial restoration of neuronal dynamics after chronic inactivation of inhibitory neurons. bioRxiv [Preprint]. 2023 May 23:2023.05.17.541057. doi: 10.1101/2023.05.17.541057. PMID: 37292888; PMCID: PMC10245685.

bottom of page